PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028113427.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 606aa MW: 70623.6 Da PI: 8.9347

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028113427.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.9	1e-15	54	123	1	71
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkke 71 +fYn+YAk vGFs+rk++ + + +++ +r++vCs++g+r++++ + +++r ra tr+gC+a+++++ + XP_028113427.1 54 DFYNQYAKVVGFSIRKDTRTMQ--ATKVLSRKWVCSRQGQRAKQHLArIDRKRAARALTRVGCDAHFRIRYN 123 6*************986666..7779**********999885788999************9875 PP
2	FAR1	44.2	6.5e-14	126	190	28	90
FAR1 28 itkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +r++vCs++g+r++++ + +++r ra tr+gC+a+++++ + gk+ vt+++ eHnH+la XP_028113427.1 126 ALSRKWVCSRQGQRAKQHLAcIDRKRAARALTRVGCDAHFRIRYNLdVGKYIVTHFNMEHNHPLA 190 57899*********99987899999*************9989*************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MDPFGCTKFE HKLEDDEVCG NKEELGSHAN DPIQSLTKND VLEMQFNSEE DANDFYNQYA 60 KVVGFSIRKD TRTMQATKVL SRKWVCSRQG QRAKQHLARI DRKRAARALT RVGCDAHFRI 120 RYNLDALSRK WVCSRQGQRA KQHLACIDRK RAARALTRVG CDAHFRIRYN LDVGKYIVTH 180 FNMEHNHPLA TSPCVPFLRS HRFVKIPDKA QVKTLHNVGV KTSQIMDLLV QQSGSFANVG 240 FIHKDLHNYI QAECKVKMKD DDAECALAYL CAKADADLYF FYKYDKDQEN RLDKLFWADS 300 RSRLDYVAFG DVLVFDTTYK TNAYNKPFVI FAEVNNHFET TIFACSLLVD ETIATYTWVL 360 QKLLEAMDNK RPVSVLTDGD MAMHEAIQKV FPSAKHRLCN WHMHRNAKRN VRVDGFEGHF 420 KHLMDLDANE VVFEEAWSKM VRKYGLQNNK WVSDTYNNKG MWAQSYLRGH FFAGMKSSQR 480 CEGMHAFFNE HLKRKLKLFE FVRCFDMALY RLRNKEADAE AKTDNSDPCL TTALQPLEKH 540 AATIFTRRLF LMFRNEIIEE ALLIFDGRKE EFDHRIYKFS KYTEFGSTWE VSLCDASLDK 600 ASKKGW

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MDPFGCTKFE HKLEDDEVCG NKEELGSHAN DPIQSLTKND VLEMQFNSEE DANDFYNQYA  60
KVVGFSIRKD TRTMQATKVL SRKWVCSRQG QRAKQHLARI DRKRAARALT RVGCDAHFRI  120
RYNLDALSRK WVCSRQGQRA KQHLACIDRK RAARALTRVG CDAHFRIRYN LDVGKYIVTH  180
FNMEHNHPLA TSPCVPFLRS HRFVKIPDKA QVKTLHNVGV KTSQIMDLLV QQSGSFANVG  240
FIHKDLHNYI QAECKVKMKD DDAECALAYL CAKADADLYF FYKYDKDQEN RLDKLFWADS  300
RSRLDYVAFG DVLVFDTTYK TNAYNKPFVI FAEVNNHFET TIFACSLLVD ETIATYTWVL  360
QKLLEAMDNK RPVSVLTDGD MAMHEAIQKV FPSAKHRLCN WHMHRNAKRN VRVDGFEGHF  420
KHLMDLDANE VVFEEAWSKM VRKYGLQNNK WVSDTYNNKG MWAQSYLRGH FFAGMKSSQR  480
CEGMHAFFNE HLKRKLKLFE FVRCFDMALY RLRNKEADAE AKTDNSDPCL TTALQPLEKH  540
AATIFTRRLF LMFRNEIIEE ALLIFDGRKE EFDHRIYKFS KYTEFGSTWE VSLCDASLDK  600
ASKKGW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-88	FAR1 family protein