PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028113496.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 329aa MW: 37023 Da PI: 6.8664

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028113496.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.4	1.3e-13	122	173	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr l+P++ + ++ + a+i A++Y+k+L+ XP_028113496.1 122 QRMTHIAVERNRRKQMNEYLSVLRGLMPES---YVQRGDQASIIGGAINYVKELE 173 79**************************...9****************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MALEAVAVQQ DLFNYNTTKD LYNLLLGNWS YEKEEECYVS CFDVLENQTE NFHPQNWSSP 60 PPPPPPSSIV PQWVPNSSSE PDITSSIAPQ ELPQLDISTT GSTRPKRRRS KSKKNKEEIE 120 NQRMTHIAVE RNRRKQMNEY LSVLRGLMPE SYVQRGDQAS IIGGAINYVK ELEQKLQSLG 180 GRKHMNQKFE SGSSSSSSSK PFSEFFTFPQ YSMSSDCSQN SIMVIDKAGV DNQSPAVADI 240 EVTMVESHAN LKIRSKKRPK QLMKIVCGLQ CLRLTILHLN VSTVAQVVLY SISVKVEDDC 300 KLTAVDEIAT AVNEMLSRIH HEAVLLLNN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	114	RRSKSKK
2	123	134	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	4e-66	bHLH family protein