PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028114368.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 153aa    MW: 17917.2 Da    PI: 10.3483
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028114368.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.55.4e-161564150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krienk    vt+ kR + ++KK  ELS+L ++++  ++f+++gk+ +++
  XP_028114368.1 15 KRIENKKALRVTYMKRNECVIKKTMELSILYGTNIVTLYFGPNGKVDTWP 64
                    79***********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    
MEHHKKGKKI RRPMKRIENK KALRVTYMKR NECVIKKTME LSILYGTNIV TLYFGPNGKV  60
DTWPQNPNEV KTLIKMYKEY TKKSQVRKSR ESSFSDCCLG AKKVAKKVSM ENEDGYGWLY  120
GLSAESVISF LEKLESKLEI LKVRIEFLKM LNE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02235.12e-10M-type_MADS family protein