PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028114372.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 204aa    MW: 23236 Da    PI: 8.6496
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028114372.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF542.2e-171261150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krienk    vt+ +R+  ++KK  ELS+LC+++v  + f+++g++ +++
  XP_028114372.1 12 KRIENKKALRVTYMRRKDCVIKKTMELSILCGINVFTLCFGPNGEVSTWP 61
                    79***********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MEDDKKGKKP MKRIENKKAL RVTYMRRKDC VIKKTMELSI LCGINVFTLC FGPNGEVSTW  60
PQNPNEVKAL IRMYKDSAKK SPVSKTCESS FSDCCLGAEK LAKKVLVGNE DGYGWLDGLS  120
AESVMSFLGK LDSKLEVLKA RIEFLKMVNE QKNSVVVMGR ETENSTKFYQ PQPQPQQQDT  180
QLNFEMENLS MLLDLCYQYQ SGIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.11e-14M-type_MADS family protein