PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028114428.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23830.1 Da    PI: 10.4174
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028114428.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.41.6e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien s rqvtfskRrng+lKKA+ELS+LCdaeva++ifs++gk y ++s
  XP_028114428.1  9 KRIENPSSRQVTFSKRRNGLLKKAFELSILCDAEVALLIFSPSGKAYQFCS 59
                    79***********************************************96 PP
2K-box65.81.5e-22851711399
           K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++e  + e++ Lk+ ie+L+  q+h+ GedL+ L +keL+q+e+qL ++++++Rsk  +++ eq++ ++++ ++lqeen+ L+k+l+
  XP_028114428.1  85 TMEVRRSEMDELKSTIETLEARQKHFAGEDLSMLGMKELKQIERQLRNGVERVRSKTRRIISEQTNFMKERHRALQEENTHLQKRLN 171
                     5566789****************************************************************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MRRGKVELKR IENPSSRQVT FSKRRNGLLK KAFELSILCD AEVALLIFSP SGKAYQFCSH  60
DMDRTISRYR SEVRLSQFND QGLRTMEVRR SEMDELKSTI ETLEARQKHF AGEDLSMLGM  120
KELKQIERQL RNGVERVRSK TRRIISEQTN FMKERHRALQ EENTHLQKRL NDLQDTDGSS  180
RTFAPGTSGT LNAFQRLLYD GLAES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.14e-46MIKC_MADS family protein