PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028114528.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 256aa MW: 29138.9 Da PI: 8.2931

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028114528.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	99	153	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F+ +++++ ++++ LA+kl+L rqV vWFqNrRa+ k XP_028114528.1 99 RKKLRLTKEQSTLLEESFKFHSTLNPTQKQTLAEKLNLLPRQVEVWFQNRRARTK 153 78889************************************************98 PP
2	HD-ZIP_I/II	117.8	6.1e-38	99	190	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+keq++lLEesF+ +++L+p++K++la++L+l prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+keveeL+++lk XP_028114528.1 99 RKKLRLTKEQSTLLEESFKFHSTLNPTQKQTLAEKLNLLPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLSDENRRLKKEVEELKRSLK 190 69**************************************************************************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MGDDEEEACK CNTRLGLGIG VDEFTLPKCD RAKKKQIVCL ELSIPPHMNR EAIDADYRIE 60 GSSSKTTELD KCNIEKKKCN DNNDDSDSNN NNNNNNCSRK KLRLTKEQST LLEESFKFHS 120 TLNPTQKQTL AEKLNLLPRQ VEVWFQNRRA RTKLKQTEVD CEFLKKCCER LSDENRRLKK 180 EVEELKRSLK LEQQQRQNSL FIQLQKAATL TMCPSCNKFT KVVAATTTTT INSTGTISAN 240 NDNKEKEAGA AIDVVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	104	SRKKLRL
2	148	156	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	4e-53	HD-ZIP family protein