PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028114682.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 233aa    MW: 27208.7 Da    PI: 9.8745
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028114682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.82.5e-171050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +i n+s r+ t+ kR++g++KK +ELS+LC+++ + ii+s+
  XP_028114682.1 10 FITNDSARKATYKKRKKGLMKKVSELSTLCGIDTCAIIYSP 50
                    89*************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MTRKKVKLAF ITNDSARKAT YKKRKKGLMK KVSELSTLCG IDTCAIIYSP YEFQPEVWPN  60
TLAVQRVLAQ FKRMPEMEQS KKMVSQESFI RQRIVKANEH LKKQLKDNRE KEMTEVMYQC  120
LTGRGLQNLV IADLHDLGWL IDQKLEEIDK KIESMKKKPL SDVSMAPMTS RSTNEMRQDQ  180
KPNLDLAMVA MQRPQWFNEW MNHPNDHMGF GGDEMVMPFG DNHNAMWSSV FFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAFITNDSARKATYKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-61M-type_MADS family protein