PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028115016.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HRT-like

Protein Properties

Length: 469aa MW: 52876.4 Da PI: 9.9791

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028115016.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	55.4	9.8e-18	270	300	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++GsvC+r Pv+gRKRC+eHKG +i XP_028115016.1 270 ICGVALGHGSVCRRLPVEGRKRCAEHKGLKI 300 8***************************986 PP
2	HRT-like	57.7	1.9e-18	337	367	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l+dG+ C+rqPv+gRKRCeeHKG++i XP_028115016.1 337 ICGVALDDGILCRRQPVRGRKRCEEHKGRKI 367 8***************************997 PP
3	HRT-like	47.1	4.1e-15	410	440	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv l+dG++C rqP+ g+KRCeeHK m+i XP_028115016.1 410 TCGVGLKDGTFCIRQPALGKKRCEEHKRMKI 440 7****************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MGASKDSVVS SRLKREDCKR TKHDSVFSEW KVLIGPSDWE DHSLGKEGAE RYRIHNLPNC 60 ASCSGLYELG IVVLHTRSGR ETSKFDPDHI IPVYVGQADN VRTRLQCYGR EGAHLENGKS 120 TGELNDSVLQ GRGLFSEIFS RGYSVVYRWA PMKNKRDAEK TEAQVLDTFD YAWNKGGNGV 180 RRPNDILKKL DRSTSRNTKF HVIVKKLQTF RQKKMGIKIE ACKPLPWENV SNTYSYQENN 240 DLFSRIFKIG RSQPRLVQLR HGFNEDYASI CGVALGHGSV CRRLPVEGRK RCAEHKGLKI 300 NGNHLKVEYR ASSFSHDTMK PQLVVDDCPV GKDSFPICGV ALDDGILCRR QPVRGRKRCE 360 EHKGRKITKS FSESRTKNKQ GHLCDPILES STYGYDSEKI LSKTRKMGTT CGVGLKDGTF 420 CIRQPALGKK RCEEHKRMKI IGSKSKLLVA DVPNVFDCSG INSCSGQKV

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MGASKDSVVS SRLKREDCKR TKHDSVFSEW KVLIGPSDWE DHSLGKEGAE RYRIHNLPNC  60
ASCSGLYELG IVVLHTRSGR ETSKFDPDHI IPVYVGQADN VRTRLQCYGR EGAHLENGKS  120
TGELNDSVLQ GRGLFSEIFS RGYSVVYRWA PMKNKRDAEK TEAQVLDTFD YAWNKGGNGV  180
RRPNDILKKL DRSTSRNTKF HVIVKKLQTF RQKKMGIKIE ACKPLPWENV SNTYSYQENN  240
DLFSRIFKIG RSQPRLVQLR HGFNEDYASI CGVALGHGSV CRRLPVEGRK RCAEHKGLKI  300
NGNHLKVEYR ASSFSHDTMK PQLVVDDCPV GKDSFPICGV ALDDGILCRR QPVRGRKRCE  360
EHKGRKITKS FSESRTKNKQ GHLCDPILES STYGYDSEKI LSKTRKMGTT CGVGLKDGTF  420
CIRQPALGKK RCEEHKRMKI IGSKSKLLVA DVPNVFDCSG INSCSGQKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	4e-97	HRT-like family protein