PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028115452.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

NF-YC

Protein Properties

Length: 248aa MW: 27972.3 Da PI: 6.2215

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028115452.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.9	9.6e-56	67	170	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql+sfw++q iek++dfknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl XP_028115452.1 67 QLQSFWANQyqeIEKVNDFKNHNLPLARIKKIMKADEDVRMISAEAPIVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 161 89****99999****************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr++l XP_028115452.1 162 VDIVPREDL 170 ****987 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MDQQGQLHYD TSQYEPNQVM GNPSQGSVVT SGGPAHSPSQ PSGSHLAHHQ LAYQHIHQQQ 60 QHQLQQQLQS FWANQYQEIE KVNDFKNHNL PLARIKKIMK ADEDVRMISA EAPIVFARAC 120 EMFILELTLR SWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL KDEALASIPR 180 GTVPVGGATD AYPYYYMPAQ HSPQGGAPGM IVGQPVMDPV LYAQQPHPYM AQQMWPQVPQ 240 QPQSPSDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	146	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	1e-83	NF-YC family protein