PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028115464.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 209aa    MW: 23274.1 Da    PI: 4.7606
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028115464.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.61e-20957149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    krie+k +rq+tf+kRr g++KK  EL+ LC++e+avi fs+ g+ + +
  XP_028115464.1  9 KRIEDKARRQTTFTKRRDGLFKKTGELCNLCGTEAAVITFSNAGNTFAF 57
                    79*****************************************987665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MGRRRVEIKR IEDKARRQTT FTKRRDGLFK KTGELCNLCG TEAAVITFSN AGNTFAFGNP  60
SVDSVLDRYL SMTSSSSRAS VDGGEVAAAE RVREREERLA EALARLEVEK KRGEAIDEAL  120
SMLKLNEDVV VGDSKVRASE EMGEIRSAVE MAQLEAEKKH DEVVDEMLTM LNAKAEASRL  180
KEVEQEVGMD VDEETTELQI GNKSQRGDR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-25M-type_MADS family protein