PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028115747.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LSD

Protein Properties

Length: 342aa MW: 36234.4 Da PI: 4.3722

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028115747.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.4	2e-12	253	277	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lLsYPrGA++VRC +C+tV XP_028115747.1 253 CGSCQELLSYPRGARLVRCLCCQTV 277 ************************9 PP
2	zf-LSD1	35.8	1.3e-11	291	315	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GAp V+C++C +V XP_028115747.1 291 CGGCAVLLMYPYGAPFVKCSSCCFV 315 **********************776 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MAKERDSQQQ DTGEELEAGD DDGPPPGWPS ISTLPAKTEP EEEEEDDDDD GPPPGWTQIA 60 VKKEEEDDDD GPPPGWQSIP PSQPPTITPA PTTPPPPPAV ASVSLKEPSR PLQSSPSMTS 120 HTMPLSSQSS SVTMNQAIPL SPRSSLSNRS YIMPLSSQSS SSATSPSIPL SPQSSPLTAS 180 NAMPLSPQSS SSATSPAIPV SLQSSPCLGS GNAAHTQLQQ QPPKQEGSAK AARTQLQQEL 240 PKQEAVEMGQ MVCGSCQELL SYPRGARLVR CLCCQTVNYC LEEHEVGQVK CGGCAVLLMY 300 PYGAPFVKCS SCCFVTEIGE HNRRPPLSVQ QGRGMPPPKP TQ

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MAKERDSQQQ DTGEELEAGD DDGPPPGWPS ISTLPAKTEP EEEEEDDDDD GPPPGWTQIA  60
VKKEEEDDDD GPPPGWQSIP PSQPPTITPA PTTPPPPPAV ASVSLKEPSR PLQSSPSMTS  120
HTMPLSSQSS SVTMNQAIPL SPRSSLSNRS YIMPLSSQSS SSATSPSIPL SPQSSPLTAS  180
NAMPLSPQSS SSATSPAIPV SLQSSPCLGS GNAAHTQLQQ QPPKQEGSAK AARTQLQQEL  240
PKQEAVEMGQ MVCGSCQELL SYPRGARLVR CLCCQTVNYC LEEHEVGQVK CGGCAVLLMY  300
PYGAPFVKCS SCCFVTEIGE HNRRPPLSVQ QGRGMPPPKP TQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-33	LSD family protein