PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028115851.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

YABBY

Protein Properties

Length: 204aa MW: 23197.4 Da PI: 6.3903

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028115851.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	186.7	1.2e-57	6	163	2	162
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesa 92 ++ + eq+CyvqC++C+til+vsvPs+sl++vvtvrCGhCt+llsvn+ kas +l ++ ++ +el +++++ +e+ ++ ++s XP_028115851.1 6 HLLDLQEQICYVQCGYCTTILLVSVPSSSLSMVVTVRCGHCTTLLSVNMIKASffphHLFSSPNQ-----DDELPKQDGSPKEEDCQKALDKRSR 95 567889*****************************************9998666333333333.....3333333333333322333333333 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162 s +s e +e++++ vp + v++PPekrqr+Psayn fikeei+r+ka+ P+++h+eafsaaakn + XP_028115851.1 96 SPVISRE--DEEDEDVVPINHIVNKPPEKRQRAPSAYNNFIKEEIRRLKAEYPNMTHKEAFSAAAKNVSF 163 3333332..4555566666667*******************************************775 PP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence
MSTLNHLLDL QEQICYVQCG YCTTILLVSV PSSSLSMVVT VRCGHCTTLL SVNMIKASFF 60 PHHLFSSPNQ DDELPKQDGS PKEEDCQKAL DKRSRSPVIS REDEEDEDVV PINHIVNKPP 120 EKRQRAPSAY NNFIKEEIRR LKAEYPNMTH KEAFSAAAKN VSFLMSKDNG DFFEKMTKPR 180 LEILDNIIPI QGKLTSSWTC HENL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-50	YABBY family protein