PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028116256.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 656aa MW: 76327.7 Da PI: 8.8403

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028116256.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.7	7e-27	27	115	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+Y+ +vGFs+rk++ +ks ++geit+rtfvCskeg r+++k++ + r +raetrtgC a + +k+ + gk++v+++++ HnH+l+ XP_028116256.1 27 EFYNSYGGRVGFSIRKQYAHKS-KTGEITSRTFVCSKEGLRKSDKRD-FSVRIPRAETRTGCGALMSIKLIRqIGKYRVINFVETHNHPLV 115 6***************9999.7888*************999.999***************9989*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence
MDVHGEDDTQ CKSILGMEFD SEQSAYEFYN SYGGRVGFSI RKQYAHKSKT GEITSRTFVC 60 SKEGLRKSDK RDFSVRIPRA ETRTGCGALM SIKLIRQIGK YRVINFVETH NHPLVVSACA 120 HMLPSQRKIS TSQYIEIDLA DDCGIPLRSS YELMGREAGG RECVGFLKKD SRELFKNKKT 180 KNLDTEEQIT NISWADNRMI IDYGQFGDVV TFDTTYKINR ESRPFAIFVG FNNHRETIVF 240 GAALMYDETT GSFIWLFKTF LEAMSNKHPK TIFIYQDVAM AKAISYVMPN TYHRLCTWHM 300 MQNAVKHMSG IFSSPGGVRS VLGKFIDEYE EEEEFFAAWN AMLDEFDVHD NSWLQSIFHL 360 RKKWVRAYVR WTWSAGMKST QLSESLNADL KEYLRSDYNL IQFFIHFERV LNEKRYKEYE 420 AEYALSYKLP RIKVQVLMLT QAGDVYTKTI FEEFQDEYVG SLELYAANCV HKDDCLVYIV 480 KAYRQSTMRE VKKDKDGNLS CFCRLFEMKG ILCSHVIKVL KDEMIIMEIP SQYILKRWTK 540 LARAEIVQDY KERDIQADPK LEQSSIYKSF ENVIQVKGLK KRIDPIRGRR RIKSSLEKAL 600 ETSRKKKQRV QDVQASSNML PHMMPPYIQV PTSMQVPNLN IIRNSSTPIY PEILGD

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence

MDVHGEDDTQ CKSILGMEFD SEQSAYEFYN SYGGRVGFSI RKQYAHKSKT GEITSRTFVC  60
SKEGLRKSDK RDFSVRIPRA ETRTGCGALM SIKLIRQIGK YRVINFVETH NHPLVVSACA  120
HMLPSQRKIS TSQYIEIDLA DDCGIPLRSS YELMGREAGG RECVGFLKKD SRELFKNKKT  180
KNLDTEEQIT NISWADNRMI IDYGQFGDVV TFDTTYKINR ESRPFAIFVG FNNHRETIVF  240
GAALMYDETT GSFIWLFKTF LEAMSNKHPK TIFIYQDVAM AKAISYVMPN TYHRLCTWHM  300
MQNAVKHMSG IFSSPGGVRS VLGKFIDEYE EEEEFFAAWN AMLDEFDVHD NSWLQSIFHL  360
RKKWVRAYVR WTWSAGMKST QLSESLNADL KEYLRSDYNL IQFFIHFERV LNEKRYKEYE  420
AEYALSYKLP RIKVQVLMLT QAGDVYTKTI FEEFQDEYVG SLELYAANCV HKDDCLVYIV  480
KAYRQSTMRE VKKDKDGNLS CFCRLFEMKG ILCSHVIKVL KDEMIIMEIP SQYILKRWTK  540
LARAEIVQDY KERDIQADPK LEQSSIYKSF ENVIQVKGLK KRIDPIRGRR RIKSSLEKAL  600
ETSRKKKQRV QDVQASSNML PHMMPPYIQV PTSMQVPNLN IIRNSSTPIY PEILGD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	589	607	RRRIKSSLEKALETSRKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-107	FAR1 family protein