PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028116305.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 688aa MW: 79584.5 Da PI: 6.3893

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028116305.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.3	2.8e-09	41	83	1	41
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtf..vCskegkr 41 +fYneY++ vGFs+r+++ +ksk++g +t+r+f vC +g + XP_028116305.1 41 EFYNEYGRIVGFSIRRDHCNKSKKDGVMTSRKFrkVCDTQGIN 83 6********************************6669999976 PP

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence
MEDGIMDDGG LEGCIEEMRE LAKDKSPYLG MEFPSEEAAY EFYNEYGRIV GFSIRRDHCN 60 KSKKDGVMTS RKFRKVCDTQ GININIADET GISLKASHDL ISVITGGKEF VGFTWEYGEA 120 GSLLRYFQQR VAENPYFYYA IQLDVDEMIT NSFWVDHQMI TDYGLFGDAV SFDTTFRTNK 180 EYRPLALFSG FNHFRMTVIF GATLLYDETT ESFEWLFETF LDAMSGKKPI SFFTCQDQAM 240 AKAISQIMLE VFHGLCTFHL MQNALKHLGY FFKSGSKFSS DLKACIYDYE NEHELIEAWN 300 SLIDKYNLQE NEWMKRTWRK REQWAHVYMK WVFTGGMRST KLSESLNGTL RRYLKGDHNI 360 VQFFTHFNRI VVDKRYEEIS AIYDSRQKLP RMKLKKSPIL IQVASLYTPP IFDLFHYELD 420 TSLCCQVKQF HELEREVKCV IGLYGNDEEY IVEGRVEVTG LRGENILGRW RLDAKDCEIE 480 EKNVVVDEDD PKLLILARYR DLCPRMVKLA TQASMHKPSY QLVDEGIKEL CVKVNNMMKG 540 VGNFGTKELD ADDPNFAQVK GIKKKDVGHK GRGRLKPWHE MMNKKTKVIS QPTRLSKTIG 600 QSSNTTNIQN SSSSQPQDVG SLYWPQLINY GYNLLTCDTN SYSPRFPQSQ PLLFEASHSP 660 QSSQGISLHL VGHNPMETEF RNERDFEV

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence

MEDGIMDDGG LEGCIEEMRE LAKDKSPYLG MEFPSEEAAY EFYNEYGRIV GFSIRRDHCN  60
KSKKDGVMTS RKFRKVCDTQ GININIADET GISLKASHDL ISVITGGKEF VGFTWEYGEA  120
GSLLRYFQQR VAENPYFYYA IQLDVDEMIT NSFWVDHQMI TDYGLFGDAV SFDTTFRTNK  180
EYRPLALFSG FNHFRMTVIF GATLLYDETT ESFEWLFETF LDAMSGKKPI SFFTCQDQAM  240
AKAISQIMLE VFHGLCTFHL MQNALKHLGY FFKSGSKFSS DLKACIYDYE NEHELIEAWN  300
SLIDKYNLQE NEWMKRTWRK REQWAHVYMK WVFTGGMRST KLSESLNGTL RRYLKGDHNI  360
VQFFTHFNRI VVDKRYEEIS AIYDSRQKLP RMKLKKSPIL IQVASLYTPP IFDLFHYELD  420
TSLCCQVKQF HELEREVKCV IGLYGNDEEY IVEGRVEVTG LRGENILGRW RLDAKDCEIE  480
EKNVVVDEDD PKLLILARYR DLCPRMVKLA TQASMHKPSY QLVDEGIKEL CVKVNNMMKG  540
VGNFGTKELD ADDPNFAQVK GIKKKDVGHK GRGRLKPWHE MMNKKTKVIS QPTRLSKTIG  600
QSSNTTNIQN SSSSQPQDVG SLYWPQLINY GYNLLTCDTN SYSPRFPQSQ PLLFEASHSP  660
QSSQGISLHL VGHNPMETEF RNERDFEV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-56	FAR1 family protein