PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028116350.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 164aa MW: 17779.1 Da PI: 8.2856

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028116350.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.6	5.8e-10	44	70	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Cky + CkF+H++ XP_028116350.1 44 PGQPECSYFLKTGDCKYRSGCKFHHPK 70 5789*********************96 PP
2	zf-CCCH	37	5.8e-12	94	117	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++ r+G+Ck+G+ CkF H+ XP_028116350.1 94 QNICSHYNRYGICKFGPACKFDHP 117 679********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence
MAPVYPTPVR SLPTPPAFLN TPADANFYTH HTQPMLVDEF PERPGQPECS YFLKTGDCKY 60 RSGCKFHHPK NRMPKTAASA LTLSDKGLPL RPDQNICSHY NRYGICKFGP ACKFDHPVNC 120 GPSDSSALSG PDKPSPSGNS ATTYGARMVV GGDNGSEALI QQHV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	4e-44	C3H family protein