PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028116609.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 189aa MW: 21779.7 Da PI: 10.218

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028116609.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.2e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+++++ +G g+W++ ++ g+ R++k+c++rw +yl XP_028116609.1 13 KGAWSKQEDQKLIHYIQIHGEGNWRSLPKAAGLLRCGKSCRLRWINYL 60 79****************************99**********97 PP
2	Myb_DNA-binding	53	7.8e-17	66	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ XP_028116609.1 66 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110 89******************.*****.*********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence
MRKPCCDKKD TNKGAWSKQE DQKLIHYIQI HGEGNWRSLP KAAGLLRCGK SCRLRWINYL 60 RPDIKRGNFG EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRKKLISKGI 120 DPRKHTLRHS INVHHHPHQP QPVPNSNPHD TRGRFSDSAA FVDHDINNDQ TSDKLPDLNL 180 NLSLSLAMN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	2e-74	MYB family protein