PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028116641.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 404aa MW: 45507.5 Da PI: 5.6328

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028116641.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70	5.5e-22	78	171	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHela 90 fYn+YAk GFs+rks+ +++ ++g++++r + Cs+eg+r ++ + +ek+r ++a tr+gCka+++++ + gk++vt+++ +HnHela XP_028116641.1 78 FYNAYAKAKGFSIRKSRFNTN-KEGKVVSRLWLCSREGQRLPKYLDrvAEKSRAPKALTRVGCKAQFRIRYDAdageGGKYVVTHFVADHNHELA 171 9**************9999.666699999*****99988877899999************987677789************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MAPAEVKREG DDYDIPNEAD DIRLINESRA EPYHGCEVGP SNEEATNINV EDSGADVKKE 60 MVDDAHRNDI VVEDGEAFYN AYAKAKGFSI RKSRFNTNKE GKVVSRLWLC SREGQRLPKY 120 LDRVAEKSRA PKALTRVGCK AQFRIRYDAD AGEGGKYVVT HFVADHNHEL AEQHCVMYLR 180 SHRILNSADK AQAMAIRNVG VKTSQIMDYM VNQSGSYENV GFVCTDLHNH IQAERRAEVE 240 DGDAQGALVY LCAKLDVDAR FFYKYGVCND NKLQNLFWAD SKSRANYAKH YDWALARIRY 300 NEAGDDAETN NTFPVRFSRI VGSNSDADTT HITDREYNAE SLPVRCKTGL VDPSTLHIKQ 360 WRLFFDVSPD SKQPVGQCVS VDAAVCKNDS TIIDEVNQVD STSY

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MAPAEVKREG DDYDIPNEAD DIRLINESRA EPYHGCEVGP SNEEATNINV EDSGADVKKE  60
MVDDAHRNDI VVEDGEAFYN AYAKAKGFSI RKSRFNTNKE GKVVSRLWLC SREGQRLPKY  120
LDRVAEKSRA PKALTRVGCK AQFRIRYDAD AGEGGKYVVT HFVADHNHEL AEQHCVMYLR  180
SHRILNSADK AQAMAIRNVG VKTSQIMDYM VNQSGSYENV GFVCTDLHNH IQAERRAEVE  240
DGDAQGALVY LCAKLDVDAR FFYKYGVCND NKLQNLFWAD SKSRANYAKH YDWALARIRY  300
NEAGDDAETN NTFPVRFSRI VGSNSDADTT HITDREYNAE SLPVRCKTGL VDPSTLHIKQ  360
WRLFFDVSPD SKQPVGQCVS VDAAVCKNDS TIIDEVNQVD STSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-28	FAR1 family protein