PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028116916.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARF

Protein Properties

Length: 693aa MW: 77275.3 Da PI: 6.3516

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028116916.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.7	2.2e-23	126	226	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +k+a+e+ ++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + + XP_028116916.1 126 FCKILTASDTSTHGGFSVLRKHANEClpqldmtQS--TPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGD 216 99************************9996444..44558********************************************..348 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_028116916.1 217 SGELRVGVRR 226 999***98 PP
2	Auxin_resp	102.9	3.9e-34	252	331	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++a+k+ +svGmRfkm+fe+eds+err++Gt+vgv +++ +Wp+SkWrsLk XP_028116916.1 252 ASHAITTQTLFVVYYKPRT--SQFIIGLNKYLEAVKNGFSVGMRFKMRFEGEDSPERRFTGTIVGVGEISH-QWPESKWRSLK 331 789*************6..9******************************************665.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence
MAHVDNLRGE RHDTGLRSHD LYTELWKACA GPLVDVPRPG ERVFYFPQGH MEQLEASTNE 60 ELNQQIPQFN LPSKILCRVV NIHLMAEPET DEVYAQITLH PEADQSEPTS PDPSPPEQPK 120 QTVHSFCKIL TASDTSTHGG FSVLRKHANE CLPQLDMTQS TPTQDLVAKD LHGYEWRFKH 180 IFRGQPRRHL LTTGWSTFVT SKRLVAGDAF VFLRGDSGEL RVGVRRLARQ QTPMPPSVIS 240 SQSMHLGVLA TASHAITTQT LFVVYYKPRT SQFIIGLNKY LEAVKNGFSV GMRFKMRFEG 300 EDSPERRFTG TIVGVGEISH QWPESKWRSL KIQWDEPATI HRPEKVSLWE IEPFVASASI 360 NLSPPAMKSK RPRSIDLPVT ENTTNSAASA FWYPGSATSL EFSHLGSTTD VQSNESIWPP 420 KQINLNSNLN NSGSCCSSRA WADGIWSPPL GNGSQNLLRD SIGDYKNAAA RSILSDYTSH 480 GLSRPNSSAT LDLVERGKKS ETSTGCRLFG IDLTNNSMWP AHPEKELACP NAVPTPVVLS 540 EADMTQTVDV LNCSKEQVQS EGLPKEMQSK QACTNSTRTR TKVQMQGVAV GRAVDLTSLE 600 GYGPLIDELE KMFEIKGELH IRNKWEVVYT DDEGDMMLVG DDPWLEFCNM VKKIIIYSSE 660 EVKKLNPRCK LPPSSLEGEG TIITLDSELK SEL

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence

MAHVDNLRGE RHDTGLRSHD LYTELWKACA GPLVDVPRPG ERVFYFPQGH MEQLEASTNE  60
ELNQQIPQFN LPSKILCRVV NIHLMAEPET DEVYAQITLH PEADQSEPTS PDPSPPEQPK  120
QTVHSFCKIL TASDTSTHGG FSVLRKHANE CLPQLDMTQS TPTQDLVAKD LHGYEWRFKH  180
IFRGQPRRHL LTTGWSTFVT SKRLVAGDAF VFLRGDSGEL RVGVRRLARQ QTPMPPSVIS  240
SQSMHLGVLA TASHAITTQT LFVVYYKPRT SQFIIGLNKY LEAVKNGFSV GMRFKMRFEG  300
EDSPERRFTG TIVGVGEISH QWPESKWRSL KIQWDEPATI HRPEKVSLWE IEPFVASASI  360
NLSPPAMKSK RPRSIDLPVT ENTTNSAASA FWYPGSATSL EFSHLGSTTD VQSNESIWPP  420
KQINLNSNLN NSGSCCSSRA WADGIWSPPL GNGSQNLLRD SIGDYKNAAA RSILSDYTSH  480
GLSRPNSSAT LDLVERGKKS ETSTGCRLFG IDLTNNSMWP AHPEKELACP NAVPTPVVLS  540
EADMTQTVDV LNCSKEQVQS EGLPKEMQSK QACTNSTRTR TKVQMQGVAV GRAVDLTSLE  600
GYGPLIDELE KMFEIKGELH IRNKWEVVYT DDEGDMMLVG DDPWLEFCNM VKKIIIYSSE  660
EVKKLNPRCK LPPSSLEGEG TIITLDSELK SEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.1	0.0	ARF family protein