PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028117322.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 248aa MW: 28210 Da PI: 8.8819

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028117322.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.1	8.3e-32	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ XP_028117322.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58 79**********************************************95 PP
2	K-box	102.5	5.5e-34	80	169	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 e++++s++qe++kL+++ e+Lqr+qRhllGedL++Ls+keLq+Le+qLe +l + R++K+++++eq+eel++ke++l + nk+L+ k+ XP_028117322.1 80 SVERETQSWYQEVSKLRAKFESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALAQTRQRKTQIMVEQMEELRQKERQLGDMNKQLKIKV 169 457789********************************************************************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA 60 GMTKTLERYQ HCNFNPHDNS VERETQSWYQ EVSKLRAKFE SLQRTQRHLL GEDLGPLSVK 120 ELQNLEKQLE GALAQTRQRK TQIMVEQMEE LRQKERQLGD MNKQLKIKVS LELSSLQTEG 180 QGLGPLPCSW NPTNASTGNT SFSVHPSQPN PMDCDNETVL QIGYQHYVAG ESSVPRTMAG 240 DIVQGWVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	1e-107	MIKC_MADS family protein