PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028117323.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 241aa MW: 27494.2 Da PI: 9.1499

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028117323.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.2	7.9e-32	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ XP_028117323.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58 79**********************************************95 PP
2	K-box	102.1	7.3e-34	80	170	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 e++++s++qe++kL+++ e+Lqr+qRhllGedL++Ls+keLq+Le+qLe +l + R++K+++++eq+eel++ke++l + nk+L+ kl+ XP_028117323.1 80 SVERETQSWYQEVSKLRAKFESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALAQTRQRKTQIMVEQMEELRQKERQLGDMNKQLKIKLQ 170 457789********************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA 60 GMTKTLERYQ HCNFNPHDNS VERETQSWYQ EVSKLRAKFE SLQRTQRHLL GEDLGPLSVK 120 ELQNLEKQLE GALAQTRQRK TQIMVEQMEE LRQKERQLGD MNKQLKIKLQ TEGQGLGPLP 180 CSWNPTNAST GNTSFSVHPS QPNPMDCDNE TVLQIGYQHY VAGESSVPRT MAGDIVQGWV 240 L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	1e-110	MIKC_MADS family protein