PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028117348.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 217aa MW: 24863.6 Da PI: 8.2174

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028117348.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.8	4e-30	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s XP_028117348.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAS 59 8***********************************************86 PP
2	K-box	82.5	9.8e-28	78	171	5	97
K-box 5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 s+++ l e+++++l++e+a + k+ie L+ +R+llGe+L+s++++eLqq+eqqLe+s++++R++K++++ e+i +l++kek l en L +k XP_028117348.1 78 SNNAlLVEHNMQHLKNEAADMSKKIEHLEAAKRKLLGECLGSCTIEELQQIEQQLERSVSTVRARKMQVFQEHIAQLKEKEKILAAENAVLCEK 171 445578899*******************************************************************************999877 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP RGKLYEFASS 60 SMQETVQRYQ RHTKDVQSNN ALLVEHNMQH LKNEAADMSK KIEHLEAAKR KLLGECLGSC 120 TIEELQQIEQ QLERSVSTVR ARKMQVFQEH IAQLKEKEKI LAAENAVLCE KYGLDLQQES 180 NEDMEIVACT KTTENLDVET ELFIGPPDAR IKRALQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	1e-82	MIKC_MADS family protein