PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028117349.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 203aa MW: 23350.8 Da PI: 8.6325

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028117349.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.9	3.5e-30	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s XP_028117349.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAS 59 8***********************************************86 PP
2	K-box	73	8.4e-25	78	158	5	84
K-box 5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 s+++ l e+++++l++e+a + k+ie L+ +R+llGe+L+s++++eLqq+eqqLe+s++++R++K++++ e+i +l++k XP_028117349.1 78 SNNAlLVEHNMQHLKNEAADMSKKIEHLEAAKRKLLGECLGSCTIEELQQIEQQLERSVSTVRARKMQVFQEHIAQLKEKY 158 455578899*********************************************************************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP RGKLYEFASS 60 SMQETVQRYQ RHTKDVQSNN ALLVEHNMQH LKNEAADMSK KIEHLEAAKR KLLGECLGSC 120 TIEELQQIEQ QLERSVSTVR ARKMQVFQEH IAQLKEKYGL DLQQESNEDM EIVACTKTTE 180 NLDVETELFI GPPDARIKRA LQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	1e-73	MIKC_MADS family protein