PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028117576.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 141aa    MW: 15616.7 Da    PI: 6.2746
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028117576.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.31.1e-141258248
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                    r+en+ +r vtfskRr g++ KA  L  L++a++a++ fs+ g+ y+
  XP_028117576.1 12 RVENEGQRMVTFSKRRRGLFNKARQLRSLTGADIAILTFSPAGRPYT 58
                    79*****************************************9887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    
MGSGKKKIEI RRVENEGQRM VTFSKRRRGL FNKARQLRSL TGADIAILTF SPAGRPYTHG  60
EPSFDALVDR YLNTVAAGEK AEEGCEAAAA NHHRLNSWLD ALQFDASDSI EDLEILKKGL  120
EEIAAKVAEK IDDVFVDSLL V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-21M-type_MADS family protein