PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028117937.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 819aa MW: 93987.9 Da PI: 8.0004

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028117937.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.2	2.8e-23	31	119	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+Y+ ++GFs+r+ + +ks ++g+it+r+fvC+keg+r +k++ ++++r e rtgC+a++++k ++ +k+ v+++ ++HnH ++ XP_028117937.1 31 DFYNTYGGRLGFSIRRGYVNKS-KDGQITSRQFVCNKEGFRVVDKRD-PLTKNPRLEVRTGCQARVVIKWDRnIQKFFVSDFLEQHNHIFV 119 6******************9.7788************9999.999**************99989************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence
MEPNNHENDG GECDWKPRVR MTFDTEQEAY DFYNTYGGRL GFSIRRGYVN KSKDGQITSR 60 QFVCNKEGFR VVDKRDPLTK NPRLEVRTGC QARVVIKWDR NIQKFFVSDF LEQHNHIFVP 120 AECTHMLPSQ RKISSSQATE IDLAERSGIR LNAAFELMGN EVGGRESLGF TKLDQKNYLR 180 TKRQNSLAYG EAGSILQYFR DKSLENPSFF YSVQLDNEEQ ITNIFWADAQ MIMDYGQFGD 240 VVTFDTTYKL NSAHRPFASF VGLNHHRETV VFGAALMYDE TADSFVWLFR RFLEAMSSKA 300 PKTIFTDQDA AMAKAIPIVM PNTTHRLCTW HLMQNALRHA NSIFKDKAMK DKGMKSVLYT 360 FMYDIEDEEE FMLKWEEMLD KYEVTDNHWL KLTFGVKEKW GWPYVRNAWG AGMSSTQLSE 420 SFNAFLKDFI RSDHNLMQFF MHFDRVLSEK RYKELQAEYA LCQKLPRVNI KVKIMEQAAA 480 VYTNKIFEEF QDEYVKSLEV NIEEIENDGE STVYTVLDSD GIKVRKVRQE CDDSVTCNCR 540 KFEMKGILCS HCLKILRERL NLKEIPSQYI LKRWTKKARS ENVKDRCGHD IQVDVRLHQT 600 SRYRSLMAIF RSVACRASES EETYNLTVEK ADELIADIET MLTAKFNMPC SDTIQQESPP 660 NTCPESFEVD GVADKNVVQA KGLKRKECTS KGRRRTKGGL ELALAKKNKT SSHNASQTSM 720 SVILQSPPLF PASAPEAPPL IPQSAPLFSS VPQLSPISPS VPQVRASPSQ FMYPAYDVLY 780 GRGRGRGCGR GHGDVDHKRT SYIPDAAAGV RQQQMQLLV

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence

MEPNNHENDG GECDWKPRVR MTFDTEQEAY DFYNTYGGRL GFSIRRGYVN KSKDGQITSR  60
QFVCNKEGFR VVDKRDPLTK NPRLEVRTGC QARVVIKWDR NIQKFFVSDF LEQHNHIFVP  120
AECTHMLPSQ RKISSSQATE IDLAERSGIR LNAAFELMGN EVGGRESLGF TKLDQKNYLR  180
TKRQNSLAYG EAGSILQYFR DKSLENPSFF YSVQLDNEEQ ITNIFWADAQ MIMDYGQFGD  240
VVTFDTTYKL NSAHRPFASF VGLNHHRETV VFGAALMYDE TADSFVWLFR RFLEAMSSKA  300
PKTIFTDQDA AMAKAIPIVM PNTTHRLCTW HLMQNALRHA NSIFKDKAMK DKGMKSVLYT  360
FMYDIEDEEE FMLKWEEMLD KYEVTDNHWL KLTFGVKEKW GWPYVRNAWG AGMSSTQLSE  420
SFNAFLKDFI RSDHNLMQFF MHFDRVLSEK RYKELQAEYA LCQKLPRVNI KVKIMEQAAA  480
VYTNKIFEEF QDEYVKSLEV NIEEIENDGE STVYTVLDSD GIKVRKVRQE CDDSVTCNCR  540
KFEMKGILCS HCLKILRERL NLKEIPSQYI LKRWTKKARS ENVKDRCGHD IQVDVRLHQT  600
SRYRSLMAIF RSVACRASES EETYNLTVEK ADELIADIET MLTAKFNMPC SDTIQQESPP  660
NTCPESFEVD GVADKNVVQA KGLKRKECTS KGRRRTKGGL ELALAKKNKT SSHNASQTSM  720
SVILQSPPLF PASAPEAPPL IPQSAPLFSS VPQLSPISPS VPQVRASPSQ FMYPAYDVLY  780
GRGRGRGCGR GHGDVDHKRT SYIPDAAAGV RQQQMQLLV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	782	791	RGRGRGCGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-127	FAR1 family protein