PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028118033.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 359aa MW: 39424.1 Da PI: 6.8338

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028118033.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.9	3.4e-08	99	123	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_028118033.1 99 FKTKLCCKFRA-GTCPYITNCNFAHS 123 69*******.***********8 PP
2	zf-CCCH	18.6	3.4e-06	173	198	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_028118033.1 173 YKGRHCKKFYTEEGCPYGDNCTFLHD 198 78888********************7 PP
3	zf-CCCH	42.9	7.9e-14	239	264	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_028118033.1 239 WKTRICNKWEMTGYCPFGNKCHFAHG 264 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MDYGQESGFS GGNVVQVLTG PQSNGVGENW GSGSADQAVW ASEDDYRVWN REASVDTTSN 60 SDYDGRQLQT RSGSEPPNKK SRNSQSGDSR SKAIGKMFFK TKLCCKFRAG TCPYITNCNF 120 AHSIEELRRP PPNWQEIVAA HEEERGVSSE PREEFQIPSL GSSGFSGETQ RSYKGRHCKK 180 FYTEEGCPYG DNCTFLHDEQ SKDRESVAIS LGPGSGGGYG GSASATASGS NSNVKPSNWK 240 TRICNKWEMT GYCPFGNKCH FAHGSQELHR YGGELMETET RDSSFAPPDV KLGAVPSRTL 300 ADTIVASVTS APHSDGYHIG VPSQRLSNVI QRTGQRPHQK WKGPDKISRI YGDWIDDFE

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MDYGQESGFS GGNVVQVLTG PQSNGVGENW GSGSADQAVW ASEDDYRVWN REASVDTTSN  60
SDYDGRQLQT RSGSEPPNKK SRNSQSGDSR SKAIGKMFFK TKLCCKFRAG TCPYITNCNF  120
AHSIEELRRP PPNWQEIVAA HEEERGVSSE PREEFQIPSL GSSGFSGETQ RSYKGRHCKK  180
FYTEEGCPYG DNCTFLHDEQ SKDRESVAIS LGPGSGGGYG GSASATASGS NSNVKPSNWK  240
TRICNKWEMT GYCPFGNKCH FAHGSQELHR YGGELMETET RDSSFAPPDV KLGAVPSRTL  300
ADTIVASVTS APHSDGYHIG VPSQRLSNVI QRTGQRPHQK WKGPDKISRI YGDWIDDFE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-127	C3H family protein