PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028118952.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 223aa    MW: 25239.1 Da    PI: 6.0985
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028118952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.29e-181261150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krienk    vt+ kR+  ++KK  ELS+LC+++v  + f+++g++ +++
  XP_028118952.1 12 KRIENKKALRVTYKKRKDCVIKKTMELSILCGINVFTLCFGPNGEVDTWP 61
                    79***********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MEGDEKGKKP MKRIENKKAL RVTYKKRKDC VIKKTMELSI LCGINVFTLC FGPNGEVDTW  60
PQNPNEVKAL VKMYKESAKK SPVRKTCESS FSDCCLGAEK VAKKVLVGNE DGYGWLDGFS  120
AESAMSFLGK LESKLEVLKA RIEFLKMVKE QKNRGAVVMG KETEETSCWF DDTNLQKNRG  180
VIVMGKETEE ACWFDDTSAI DNFEEDDLAM LLDLSHQYQL GIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1828KKPMKRIENKKALRVTYKKRK
22028LRVTYKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.12e-13M-type_MADS family protein