PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028118954.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

M-type_MADS

Protein Properties

Length: 186aa MW: 21622 Da PI: 8.8551

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028118954.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	56	5.2e-18	12	61	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk vt+ kR+ ++KK ELS+LC+++v + f+++gk+ +++ XP_028118954.1 12 KRIENKKALRVTYKKRKDCVIKKTMELSILCGINVFTLCFGPNGKVDTWP 61 79***********************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence
MEDDEKGKKP MKRIENKKAL RVTYKKRKDC VIKKTMELSI LCGINVFTLC FGPNGKVDTW 60 PQNPNEVKAL IRMYKDSAKK SPLPRKFWWG NEDGYGWLDG LSAESVMSFL GKLDSKLEVL 120 KARIEFLKMV NEQKNSVVVM GKETENSTEF YQPQPQPQQQ DTQLNFEMEN LSMLLDLCYQ 180 YQSSIF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	28	KKPMKRIENKKALRVTYKKRK
2	20	28	LRVTYKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	1e-12	M-type_MADS family protein