PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028119024.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18909.3 Da    PI: 10.221
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028119024.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.74.7e-161564150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+ienk    vt+ kR + ++KK  ELS+L ++++  ++f+++gkl +++
  XP_028119024.1 15 KQIENKKALRVTYMKRNECVIKKTMELSILYGINIVTLYFGPNGKLDTWP 64
                    68***********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MEHDKKGKKI RRPMKQIENK KALRVTYMKR NECVIKKTME LSILYGINIV TLYFGPNGKL  60
DTWPQNPNEV KALIKMYKEY AKKSQVRKSH ESSFSDCCLG AKKVAKKVSM ENEDGYGWLD  120
GLSAESVISF LGKLESKLEV LKTRIEFLKM LNEQKIIVVM GKET
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31140.13e-11MIKC_MADS family protein