PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028119273.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 698aa MW: 79543.5 Da PI: 9.3893

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028119273.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28	7.3e-09	36	103	1	71
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 +fY +YAk+vGFs+ +++ ++ge Cs++gkr ++++ + +++ +t+++Cka+ +++ + XP_028119273.1 36 SFYAKYAKHVGFSIAYKTQVCG-DDGELRYLGIECSRSGKRIRKSDV--NPLKPSLSTKIDCKARRRLEIN 103 5***********99988776.9999**********997765..999**********9777665 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MEIGSNSAEN PLLNESEAVE EPKRGMCFSS KQEVYSFYAK YAKHVGFSIA YKTQVCGDDG 60 ELRYLGIECS RSGKRIRKSD VNPLKPSLST KIDCKARRRL EINDQPGIGV SRNYHSMVVE 120 ARGYESLTFD ERDARNYIDR ARKLRLGEGD SDALQKYFLR MHAQNSSFYY VIDVDTDFHI 180 RNLFWADAMS RAAYKEFGDE LTTMDSRFCL VVACYLVKTL IHLFAIQIMV KLQKIPEKLK 240 GYSQYESMKM DLQNAVYDTF TKDEFEMKWK DMIAKFNLYE NQWLGVLHDE RHRWVPVEKE 300 KKADFKSRHK VFDCLTVYGF EKQFQDAYTN TKFKEVQAEM KRLVYCQPFL VKEEGSICTY 360 FVKEAMVVFG KMKHVDFVVY YNSTEFDVQC MCRLFEFRGI MCAHSLVVLI ARCINEVPNK 420 YILPRWRKDL DRGYTCMKTI YTGFGDDFNA KVYEKMNRKL VIIAQFAGNC EGKIKLIDRG 480 LDEIKAKVMK DDEGGGSNVA PSTSNVPPIT SNVPSSPIAS INRKAISHTK LLSPLVARRK 540 GRPVTKRKVA KVDQIVNRLK ASKRKHNKSK GTKVLGGEGE GQCQSQPKRS VRREVYTYVV 600 GMENSMCVPG HMVNAIGGTS LTPASVDIMS RQSFINPPTQ IYGVGTSLTP SDCIGGTPGF 660 MRSQQSMTVT HQIYGAVPSS FVNFNVQMSH NDCGGSFR

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MEIGSNSAEN PLLNESEAVE EPKRGMCFSS KQEVYSFYAK YAKHVGFSIA YKTQVCGDDG  60
ELRYLGIECS RSGKRIRKSD VNPLKPSLST KIDCKARRRL EINDQPGIGV SRNYHSMVVE  120
ARGYESLTFD ERDARNYIDR ARKLRLGEGD SDALQKYFLR MHAQNSSFYY VIDVDTDFHI  180
RNLFWADAMS RAAYKEFGDE LTTMDSRFCL VVACYLVKTL IHLFAIQIMV KLQKIPEKLK  240
GYSQYESMKM DLQNAVYDTF TKDEFEMKWK DMIAKFNLYE NQWLGVLHDE RHRWVPVEKE  300
KKADFKSRHK VFDCLTVYGF EKQFQDAYTN TKFKEVQAEM KRLVYCQPFL VKEEGSICTY  360
FVKEAMVVFG KMKHVDFVVY YNSTEFDVQC MCRLFEFRGI MCAHSLVVLI ARCINEVPNK  420
YILPRWRKDL DRGYTCMKTI YTGFGDDFNA KVYEKMNRKL VIIAQFAGNC EGKIKLIDRG  480
LDEIKAKVMK DDEGGGSNVA PSTSNVPPIT SNVPSSPIAS INRKAISHTK LLSPLVARRK  540
GRPVTKRKVA KVDQIVNRLK ASKRKHNKSK GTKVLGGEGE GQCQSQPKRS VRREVYTYVV  600
GMENSMCVPG HMVNAIGGTS LTPASVDIMS RQSFINPPTQ IYGVGTSLTP SDCIGGTPGF  660
MRSQQSMTVT HQIYGAVPSS FVNFNVQMSH NDCGGSFR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	542	552	RPVTKRKVAKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	4e-47	FAR1 family protein