PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028119527.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 204aa MW: 23755.7 Da PI: 7.1156

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028119527.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.6	1.2e-21	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +i++k +rq+tfskRr+g++KKA+ELSvLCd++va+ +f s + y +s XP_028119527.1 10 PIQDKHKRQITFSKRRQGLMKKAQELSVLCDVDVALAVFTSGCRAYKFS 58 699************************************9988888776 PP
2	K-box	35.6	4e-13	78	171	5	99
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 sg+ ++++ e+ qqe + ++++ L + qR + + +e+L++ L +Le+ L+ l + Rs+K++l++e++ l +ke++l+ee+k ++++++ XP_028119527.1 78 SGN-SNDHQPEKHQQECRTPCENNNILPSVQRFFESQAVEQLDISLLSRLEHFLDAKLAQTRSRKTQLMMESLAALHEKERRLREEEKLISEMIN 171 444.57778999***************************************************************************99998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence
MGRRRVELRP IQDKHKRQIT FSKRRQGLMK KAQELSVLCD VDVALAVFTS GCRAYKFSGG 60 NSFNTILERY RTHVEANSGN SNDHQPEKHQ QECRTPCENN NILPSVQRFF ESQAVEQLDI 120 SLLSRLEHFL DAKLAQTRSR KTQLMMESLA ALHEKERRLR EEEKLISEMI NEMQTEGMIN 180 GEDNQEPTVE LYNQWANNNN YPSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30260.1	6e-34	MIKC_MADS family protein