PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028119836.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 475aa MW: 51231.3 Da PI: 8.2231

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028119836.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.8	2.7e-15	302	347	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++++P++ K +Ka++L +++eY+k+Lq XP_028119836.1 302 HNQSERKRRDKINQRMRTLQKMVPNS-----SKTDKASMLDEVIEYLKQLQ 347 9**********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MSLCVPSWDI DETPTPPTLT LRAHSNSNSL APDVSMLDYE VAELTWENGQ LAMHGLGTPR 60 VPNKPPPTSS ATTTKYTWEK PRAGGTLESI VNQATCCPIF KPSIGSGTMN EDLVPWFDHH 120 HRAAAASATA TMTMDALVPC STRAKDTSTH VLKRTSNSTC MVGSATPVGS CSGANTFENN 180 GGDCGGGVMK RARVAARVPV AAVEWSSRDN SVSGGSVSRQ LTTIDTGERE LDVCGFTSTS 240 MGSPENTSSA KQCTKATTTT ADDHDSVCHS RPQREAGDEE DKRKAARKSS ISTKRSRAAA 300 IHNQSERKRR DKINQRMRTL QKMVPNSSKT DKASMLDEVI EYLKQLQAQV QMMSRMNMSS 360 MMMPMTLQQQ LQLSMMAPMG MGMGIGMGMG MGVMDMNTIS RSNIAGIPPL LHPTAFMPLP 420 SWDGTGDRLS APATVIPDPM SAFLACQPQP MTMDAYTRMA ALFQQLHQPP STSKT

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MSLCVPSWDI DETPTPPTLT LRAHSNSNSL APDVSMLDYE VAELTWENGQ LAMHGLGTPR  60
VPNKPPPTSS ATTTKYTWEK PRAGGTLESI VNQATCCPIF KPSIGSGTMN EDLVPWFDHH  120
HRAAAASATA TMTMDALVPC STRAKDTSTH VLKRTSNSTC MVGSATPVGS CSGANTFENN  180
GGDCGGGVMK RARVAARVPV AAVEWSSRDN SVSGGSVSRQ LTTIDTGERE LDVCGFTSTS  240
MGSPENTSSA KQCTKATTTT ADDHDSVCHS RPQREAGDEE DKRKAARKSS ISTKRSRAAA  300
IHNQSERKRR DKINQRMRTL QKMVPNSSKT DKASMLDEVI EYLKQLQAQV QMMSRMNMSS  360
MMMPMTLQQQ LQLSMMAPMG MGMGIGMGMG MGVMDMNTIS RSNIAGIPPL LHPTAFMPLP  420
SWDGTGDRLS APATVIPDPM SAFLACQPQP MTMDAYTRMA ALFQQLHQPP STSKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	306	311	ERKRRD
2	307	312	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	3e-91	bHLH family protein