PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028120269.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 284aa MW: 32759.1 Da PI: 7.4568

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028120269.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.4	1.4e-12	47	94	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd++l+++++++ W+ ++ g+ R++k+c++rw +yl XP_028120269.1 47 KGAWSREEDQKLINYINKYRIWIWSEMPKAAGLLRSGKSCRLRWVNYL 94 79***************999******99**********97 PP
2	Myb_DNA-binding	51.6	2.1e-16	100	143	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T eE+e +++ +++lG++ W++Ia+ ++ gRt++++k++w++ XP_028120269.1 100 RGNFTREEEETILNMHEMLGNK-WSAIAAALP-GRTDNEIKNYWHS 143 89******************.*****.*********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MMCVCLSLSP SIYINSFLEG LGNSSKLGYN LTEMMRTLHF DKKTLKKGAW SREEDQKLIN 60 YINKYRIWIW SEMPKAAGLL RSGKSCRLRW VNYLKPGIRR GNFTREEEET ILNMHEMLGN 120 KWSAIAAALP GRTDNEIKNY WHSRLKKRLR KPRTQSQASS STEVSEWPRN VPDSAQPPFS 180 VCLSPNTGPA VWINENQNIE ANLGSKLETF DGLLSSCENQ NMEENLYLEN LQEMFENPGF 240 ALPQSELWFS EPTSPYGFYH DPWFNFNLSV QSDMAGVKEP NVHF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	150	RLKKRLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	8e-50	MYB family protein