PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028120771.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 381aa MW: 42358 Da PI: 8.3744

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028120771.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.1	3.1e-08	191	238	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P + K Ka +L + + Y++sLq XP_028120771.1 191 SHSLAERVRREKISERMKMLQALVPGC-----DKvSGKALMLDEIISYVQSLQ 238 8***********************9.....45388*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MAAFSYYQHD PFLLDPNTPI KIPGFSEEPN NTTTTTITNS SYFSQCHPPQ SQSLHQIPVD 60 LSAHESSCLE NVIKVYISSN NEPSPSVTNI NKHSTDSSSV VDKPESTVDQ VTQKVSTTMD 120 NKRKRKSNYS PHSKHAREVK GKKQNKCNSV KKDGDEEKRP KADDIKKAAL EEAPKAGYIH 180 VRARRGQATD SHSLAERVRR EKISERMKML QALVPGCDKV SGKALMLDEI ISYVQSLQNQ 240 VEFLSMKLAS VNPMFYDFGM DLDALMVTPD QRLDGSVQSP PPFQNVQQQC NLPKATAFSD 300 EPLPPPPSLS TPPNTYPLLS TLVHSLPFYF NKGSLRITDS SYGMCMTKDK NLSINLVSAT 360 WVLSINIKYQ ATASCPTNIC L

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MAAFSYYQHD PFLLDPNTPI KIPGFSEEPN NTTTTTITNS SYFSQCHPPQ SQSLHQIPVD  60
LSAHESSCLE NVIKVYISSN NEPSPSVTNI NKHSTDSSSV VDKPESTVDQ VTQKVSTTMD  120
NKRKRKSNYS PHSKHAREVK GKKQNKCNSV KKDGDEEKRP KADDIKKAAL EEAPKAGYIH  180
VRARRGQATD SHSLAERVRR EKISERMKML QALVPGCDKV SGKALMLDEI ISYVQSLQNQ  240
VEFLSMKLAS VNPMFYDFGM DLDALMVTPD QRLDGSVQSP PPFQNVQQQC NLPKATAFSD  300
EPLPPPPSLS TPPNTYPLLS TLVHSLPFYF NKGSLRITDS SYGMCMTKDK NLSINLVSAT  360
WVLSINIKYQ ATASCPTNIC L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	146	KRKRKSNYSPHSKHAREVKGKKQNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	4e-55	bHLH family protein