PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028120878.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 231aa MW: 26844.7 Da PI: 9.3124

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028120878.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96	1.6e-30	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLC+aeva+i+fss+g++yey+ XP_028120878.1 9 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCEAEVALIVFSSRGRVYEYA 58 79***********************************************8 PP
2	K-box	104.9	1e-34	82	173	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + e +a+ +qqe++kL+++i+++q+++R l+Ge+L+ L++keL+qLe++Le+++++iRskK+e++l+++e+lqk+e el++en Lr+k++e XP_028120878.1 82 TPEINAQFYQQESKKLRQQIQMIQNTNRSLMGEGLDCLNMKELKQLENRLERGITRIRSKKHEMILAETENLQKREMELENENAFLRAKIAE 173 567799***********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSVLCE AEVALIVFSS RGRVYEYANN 60 NIKSTIERYK KAVADNSNPC PTPEINAQFY QQESKKLRQQ IQMIQNTNRS LMGEGLDCLN 120 MKELKQLENR LERGITRIRS KKHEMILAET ENLQKREMEL ENENAFLRAK IAETERIQEQ 180 NMVPGEEYNA IQAYFARNDL VLQLNIMDAE HPPPPPAAAY QRFDKKSLHL G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.1	1e-105	MIKC_MADS family protein