PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028121456.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 310aa MW: 34631.9 Da PI: 8.2228

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028121456.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.8	3.7e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l d++k +G g+W+ +++ g++R++k+c++rw++yl XP_028121456.1 14 RGAWTAAEDQILTDYIKVYGEGRWRNLPKKAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	51.2	2.9e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_028121456.1 67 RGNISHDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 78999***************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MGRSPCCAKE GLNRGAWTAA EDQILTDYIK VYGEGRWRNL PKKAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SHDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGKKVHNDH 120 YRSAPSTRNK NSNQSDHDNK NPNMVSPPPP PKTNMESHPK TKSHDVVRAK AMRCSKIFIT 180 PPPQPPHKPD QTTVEPPPPP PPLLAELSSL CNGLLSSFTP EDDHPTDFML DVNMMRDVCL 240 SDLLNSDLAA AAAGLYCGGF SYSNDNNSTN DSKDILEDWT VNNGFQPNVG SNHHGFSSIL 300 ESGGGDWQFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-61	MYB family protein