PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028122222.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 506aa MW: 56437 Da PI: 5.9971

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028122222.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.7e-12	302	347	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L XP_028122222.1 302 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 347 799*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MDELIISSSS SSSVVSSSHE SPPTLQQRLQ FIVQNQPEWW SYSIFWQSSN DHNGRRLFLS 60 WGDGHFQGTR SNNKDKVTNK NSVAERRKEL MRGLQASMMI NENVNETTID CSEDDDVTDA 120 EWFYVMSLTR SFSAGDGVPG KAFSSGSLVW LTGGHQLQFY NCERAKEAQI HGIVTLVCIP 180 TSCGVLEMGS SEMIKENWGL VNQAKSLFGS DLIIPKQPNH SIQFLDRNIS FADIGLVTGF 240 QQEEYERDNK GDTKKRSYVE SEHSLSDSDC PFVTPILEPQ PQQRAPKKRG RKPGVGRETP 300 LNHVEAERQR REKLNHRFYA LRAVVPNVSR MDKASLLSDA VSYINELKNK VEDLKSQLQI 360 QDSNNCTNSK KMKIEMADAT DNQSTTTTAT NTNTTTTTSV DQTRANNNNN NNPFGGVVAL 420 GVEVEVKIVG SDALIRVQSE NTNYPSARLM DAIRDLELEV HHANMSSVND LMLQDVVIRA 480 PNQQGLTSED GIKAALIRRL GVGQTC

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MDELIISSSS SSSVVSSSHE SPPTLQQRLQ FIVQNQPEWW SYSIFWQSSN DHNGRRLFLS  60
WGDGHFQGTR SNNKDKVTNK NSVAERRKEL MRGLQASMMI NENVNETTID CSEDDDVTDA  120
EWFYVMSLTR SFSAGDGVPG KAFSSGSLVW LTGGHQLQFY NCERAKEAQI HGIVTLVCIP  180
TSCGVLEMGS SEMIKENWGL VNQAKSLFGS DLIIPKQPNH SIQFLDRNIS FADIGLVTGF  240
QQEEYERDNK GDTKKRSYVE SEHSLSDSDC PFVTPILEPQ PQQRAPKKRG RKPGVGRETP  300
LNHVEAERQR REKLNHRFYA LRAVVPNVSR MDKASLLSDA VSYINELKNK VEDLKSQLQI  360
QDSNNCTNSK KMKIEMADAT DNQSTTTTAT NTNTTTTTSV DQTRANNNNN NNPFGGVVAL  420
GVEVEVKIVG SDALIRVQSE NTNYPSARLM DAIRDLELEV HHANMSSVND LMLQDVVIRA  480
PNQQGLTSED GIKAALIRRL GVGQTC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	1e-76	bHLH family protein