PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028122230.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 252aa MW: 28800.2 Da PI: 7.3706

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028122230.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	50.1	4.6e-16	30	83	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqN Ra++k XP_028122230.1 30 KKRRLNLEQVKTLEKNFELGNKLESERKMQLARALGLQRRQIAIWFQNMRARWK 83 4557899**********************************************9 PP
2	HD-ZIP_I/II	116.6	1.4e-37	29	120	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqvk+LE++Fe +kLe+erK++lar+Lglq rq+a+WFqn RAR+ktkqlEkdy++ kr++da+k++n++L++++++L++e+ XP_028122230.1 29 EKKRRLNLEQVKTLEKNFELGNKLESERKMQLARALGLQRRQIAIWFQNMRARWKTKQLEKDYDVHKRQFDAIKANNDALQSQNQKLQAEII 120 69**************************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MSFSAIEVCD HETNGVEDDL LDDGSQAGEK KRRLNLEQVK TLEKNFELGN KLESERKMQL 60 ARALGLQRRQ IAIWFQNMRA RWKTKQLEKD YDVHKRQFDA IKANNDALQS QNQKLQAEII 120 ALKNREPTKS INLNKEIEGS RSNRSENSSE IKLDISTRTP PAMDSPSSNH HHGHPIIPTS 180 SSTPLFPPSI ITRPTSAAMA HLFLNSSSSS RQPDHKIIDH QNAIKEESFS NMFCAIDDQS 240 GFWPWLEQQH FN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-86	HD-ZIP family protein