PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028122875.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 450aa    MW: 52108.8 Da    PI: 8.204
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028122875.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.5e-09405427225
                     -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                      + lCrf+a+ G C+yGdrCk+ H
  XP_028122875.1 405 QRQLCRFYAQ-GRCHYGDRCKYLH 427
                     689*******.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    
MEISEQSEVA AEKFHYNEED ESEYEECDSD DSDEDPTFEV VDKIRCRFSR LSTKNKPKSR  60
NIKEMEEGNE EDPDVVVEMV VPELGEEDQK SFEAVQKIIE VGQVEKLKVD QCKVYLRKHG  120
LRLTGNKDIL IERIKEHLEG GGEKKYPISS FVLNCKGDAC TGDVVMFEQN VYEMFNIASR  180
SASGPPCGKR IVAGRIVKES YGAAKQQHTF TIEVLWSEGE KPLPPLYPLL IKGRNLYRLK  240
TMRQRWENEG ERQKMISEKH ARGSLARSNR EARIQLKDMK KASTSVPIVN VPSQRIQQWC  300
QNHEPIMKSI PSHCQFQRQS HEGNNPLRRP LTNMNCSIQS KDPYPFGSCP GSMSPLRSHN  360
HERSMFCPLR NPIQRQGPER SVNPNSSRHA HKGNMNFSPT KGPFQRQLCR FYAQGRCHYG  420
DRCKYLHEYR GNQNYGERTD ERWPSDLRYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.21e-06C3H family protein