PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028122921.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MYB
Protein Properties Length: 285aa    MW: 32898.9 Da    PI: 5.89
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028122921.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.7e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
   XP_028122921.1 14 RGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding55.21.6e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +++ E+ ++++++++lG++ W++Ia++++ gRt++++k++w++
   XP_028122921.1  67 RGEFSEAEENQIIQLHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      899*******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGEF SEAEENQIIQ LHARLGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKMLG  120
LDPVTHKPME QNEKVDVQKT ETITTDFDSS KEEEERLGVT VTMSEKHTKN HAEFVETREK  180
QNDKVDMAFD ETTNDLLRSY ELMLCRSLDD GGLLNTTTTT STTSNSNYNP SFSLEDSLNP  240
SCMGESSSSI QEDSIQRWVD SVNSMLSWDS FNQLDEGLFF SENVQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.19e-85MYB family protein