PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028123138.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB_related

Protein Properties

Length: 869aa MW: 96308 Da PI: 9.1769

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028123138.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.9	4.2e-07	770	819	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_028123138.1 770 RSPFSVYEVEALVQAVEKLGTGRWREVKLRAFdnaKHRTYVDLKDKWKTL 819 678889999***************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 869 aa Download sequence
MAKINGGVKR LDYGFNDYQV PPTPRATRSA RRRVPFRKNV DDNQICAFYL LATVAGKLLL 60 EGENSPSSGN ALTGKELCTI VKDSFKKEQK DEDNPSKAEP CGRGSCDRSF SFSELASHAP 120 ALHHSLKEFS HAHIDDCWGL ASVITTSDCS ENVGSAKKLK SKIQLGSSAS KLEVASSGFQ 180 ESCDFTVGNE NKKKIKIESP KAGNALNVTK ADICSSDDLA VRDRKPPALV SVNNRVKLPS 240 CIDQIPSSSF PACRDDVKLV IRDDDENSSG CSQPSTTTKT FRSPLCIVFG CSAEKLEPLS 300 WDLRIQIAID VARALEYLLD GAIEAVSDLK TYLAARLLKR LDFPEMKFSL CFMGYEFRQL 360 LVCIEMEIGL FIRRTLMVAL FCLWVPMKVM VRTGNAGVSS LKPNVVNIGA LYTFNSVIGR 420 SAKPAIESAV DDVNSDSTAS ELCEKFDANK NAFSDVFKTL LKLKFPAVNR RIRKFFSSKY 480 WKVTPKLKDE EHFNADSEIK PVYHNRKICY KHRRSQRDYP FKKRRLYDRS SVSNFEGISS 540 EGISSSPRKG FSCDASGSSA TPRGASGISA CVAGQHTSFQ SRDSYVKLRI KSFKVPELVI 600 EIPESATVGS LKRTVMDAVT AILGGGLRVG VLQGKKIRDD NKTLLQTGIC HNNKLDALGF 660 SLEPNPSHAP QSLCHEDRPF LLACDTPQPL TRYPPAPSVV HNVVQQRTAD TLPDPPLSSL 720 GNFIESDHDL APSPPDMSID KSPTHSRALV AVPAMNVEAL AVVPMRKSKR SPFSVYEVEA 780 LVQAVEKLGT GRWREVKLRA FDNAKHRTYV DLKDKWKTLV HTARISPQQR RDEPVPQELL 840 DRVLTAHAYW SQQEAKQQLK QQHSETCRL

Sequence ? help Back to Top

Protein Sequence Length: 869 aa Download sequence

MAKINGGVKR LDYGFNDYQV PPTPRATRSA RRRVPFRKNV DDNQICAFYL LATVAGKLLL  60
EGENSPSSGN ALTGKELCTI VKDSFKKEQK DEDNPSKAEP CGRGSCDRSF SFSELASHAP  120
ALHHSLKEFS HAHIDDCWGL ASVITTSDCS ENVGSAKKLK SKIQLGSSAS KLEVASSGFQ  180
ESCDFTVGNE NKKKIKIESP KAGNALNVTK ADICSSDDLA VRDRKPPALV SVNNRVKLPS  240
CIDQIPSSSF PACRDDVKLV IRDDDENSSG CSQPSTTTKT FRSPLCIVFG CSAEKLEPLS  300
WDLRIQIAID VARALEYLLD GAIEAVSDLK TYLAARLLKR LDFPEMKFSL CFMGYEFRQL  360
LVCIEMEIGL FIRRTLMVAL FCLWVPMKVM VRTGNAGVSS LKPNVVNIGA LYTFNSVIGR  420
SAKPAIESAV DDVNSDSTAS ELCEKFDANK NAFSDVFKTL LKLKFPAVNR RIRKFFSSKY  480
WKVTPKLKDE EHFNADSEIK PVYHNRKICY KHRRSQRDYP FKKRRLYDRS SVSNFEGISS  540
EGISSSPRKG FSCDASGSSA TPRGASGISA CVAGQHTSFQ SRDSYVKLRI KSFKVPELVI  600
EIPESATVGS LKRTVMDAVT AILGGGLRVG VLQGKKIRDD NKTLLQTGIC HNNKLDALGF  660
SLEPNPSHAP QSLCHEDRPF LLACDTPQPL TRYPPAPSVV HNVVQQRTAD TLPDPPLSSL  720
GNFIESDHDL APSPPDMSID KSPTHSRALV AVPAMNVEAL AVVPMRKSKR SPFSVYEVEA  780
LVQAVEKLGT GRWREVKLRA FDNAKHRTYV DLKDKWKTLV HTARISPQQR RDEPVPQELL  840
DRVLTAHAYW SQQEAKQQLK QQHSETCRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-111	MYB_related family protein