PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028123577.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 210aa    MW: 23883.7 Da    PI: 6.7256
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028123577.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.61.9e-141160150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    kr+e + +r vtfskRr+g++ KA  L  L++a++a++ fs+ g+ y+ s
  XP_028123577.1 11 KRVEKEGQRMVTFSKRRHGLFNKARQLRSLTGADIAILTFSPAGRPYTHS 60
                    6889999**************************************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MGSGKKKIEI KRVEKEGQRM VTFSKRRHGL FNKARQLRSL TGADIAILTF SPAGRPYTHS  60
EPSFDALVDR YLNTAAAGEK AEEGCEAAAA NHHRLSSWLD ALQFDASDSI EDLDSVTTPA  120
KDIWDFLKDR YQTTGLAHQY QLQNQLHQMR QESSQSINDF LSQMHSIWDQ LALSEPTWPH  180
REDAVLFTTY RNQQSYSVGF VYTTVTVVLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-16M-type_MADS family protein