PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028123604.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 252aa    MW: 26436 Da    PI: 8.2736
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028123604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-085883227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    kt+ C+ +     Ck+Gd+C+FaHg+
  XP_028123604.1 58 KTRMCNKYNTAEGCKFGDKCHFAHGE 83
                    89**********************96 PP
2zf-CCCH34.63.2e-11219243126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+ C +fa+ G C +G+rC+FaHg
  XP_028123604.1 219 YKTKMCENFAK-GSCTFGERCHFAHG 243
                     9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MDCSTAGCPF GENCHFLHYV PGGYNAVAQM MNLAPAPVSR NMAAPPPIPD GSSPSGVKTR  60
MCNKYNTAEG CKFGDKCHFA HGEWELGKPV APSQDDSRAM GAILSRFPGR IEPPAPAPVT  120
GFGDSATAKI SVDASLAGAI IGKVGVNSKQ ICRQTGVKLS IRDHESDANL RNIELEGTFD  180
QIKQASSMVR ELIVSVGSMG GHAKTPGAPA SSHPAASNYK TKMCENFAKG SCTFGERCHF  240
AHGAAELRKS GV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-68C3H family protein