PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028123644.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 228aa    MW: 24858 Da    PI: 7.1819
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028123644.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.32.7e-292103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l++ +     p++q+ ++ +v+k+FG++ ++++l+a+p+++r+ +++sl++eA+ r+ +P++Gavg++++++++++q+
  XP_028123644.1   2 SCSGCRVLRKGCNENCILRQSLqgietPQAQAYATVFVAKFFGRAGLMSFLSAVPDSQRPPLFQSLLFEACGRTVNPINGAVGLLWTGNWHICQA 96 
                     6********************************************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_028123644.1  97 AVETVLR 103
                     *998875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MSCSGCRVLR KGCNENCILR QSLQGIETPQ AQAYATVFVA KFFGRAGLMS FLSAVPDSQR  60
PPLFQSLLFE ACGRTVNPIN GAVGLLWTGN WHICQAAVET VLRGGVLRPI PEFSGETPAD  120
EFDDASNNNT KSMDFFGSLD LHSASKVKDF NELTARSQPI ADLDLCLEQS LKTAGGRVNR  180
RPEKRRAETP SSSKSEESET TTLESGGSAY NQTLQGGRNE GKLLRLFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-67LBD family protein