PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028124028.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family Trihelix
Protein Properties Length: 528aa    MW: 60731.5 Da    PI: 6.6422
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028124028.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.41.1e-2997182187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+ql+a
  XP_028124028.1  97 RWPRQETLTLLEVRSKLDSKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLDA 182
                     8*************************************999*****************************98..55667*******85 PP
2trihelix53.46.8e-17381461283
        trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                     W++ e+ +L+++r++me+r+++ ++++  lWe +++km+  g+ rs  +Ck+kw+++n   ++ k+ +kkr +e+s++c yf+
  XP_028124028.1 381 WPECEITKLMQLRNSMESRFQQsSCSEDVLWEGIAAKMSYLGYDRSGLMCKDKWDSINC-LRERKDCNKKR-KENSKSCCYFQ 461
                     *********************7479********************************97.58999999997.788889*9*97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    
MEMEDQYGIP DLRQYMNARN HFPAIPPPPD LFSGHRNLTE THHHHHHPYD MVMVPRSLHH  60
HEFPSDSTTT TAAAASVEME VGGGGGGFGV DGGGTGRWPR QETLTLLEVR SKLDSKFKEA  120
NQKGPLWDEV SRIMSEEHGY QRSGKKCREK FENLYKYYKK TKEGKAGRQD GKHYRFFRQL  180
DALYGDNNTT QPVSASETHL VGNNFEFHNA TNNNAQANQE CFQAPKLCDS LSLSNSSEFD  240
SSSSDDDNNS MEKKKKRRGR RSWKAKIRDF IDSQMRKLME KQEELLEKMM KTLERKEQER  300
MSREEEWRAQ EAARIEREHK FWANERAWIE ARDAALMETL QKVAGKEVKV SSQLQEELIG  360
AELQSLGENL NENGSETITS WPECEITKLM QLRNSMESRF QQSSCSEDVL WEGIAAKMSY  420
LGYDRSGLMC KDKWDSINCL RERKDCNKKR KENSKSCCYF QNSESVVHNQ GRAYIETNEQ  480
GPEITTTRVG SNDGNATMHD SCLRFLVGID GDNMWDNYGL KLSKGENH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253258KKKKRR
2253261KKKKRRGRR
3253281KKKKRRGRRSWKAKIRDFIDSQMRKLMEK
4254259KKKKRR
5254282KKKKRRGRRSWKAKIRDFIDSQMRKLMEK
6255283KKKKRRGRRSWKAKIRDFIDSQMRKLMEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.16e-57Trihelix family protein