PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028124247.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 277aa MW: 31417.2 Da PI: 7.0491

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028124247.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2e-18	79	132	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k XP_028124247.1 79 KKRRLNMEQVKALEKSFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 132 456899***********************************************9 PP
2	HD-ZIP_I/II	128.7	2.4e-41	78	168	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE+sFe +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlE+dy+ Lkr+++alk++n++L++++++L +el XP_028124247.1 78 EKKRRLNMEQVKALEKSFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLERDYNLLKRKFEALKADNDALQAHNKKLVSEL 168 69*************************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MAFVSAEFMF QPREDNHSPS TSPNILSSCS PQDFHIAGVS SSPAQMRRSM SFSGIGSKCE 60 EMHVDDEMSD DDGSPLGEKK RRLNMEQVKA LEKSFELGNK LEPERKLQLA RALGLQPRQV 120 AIWFQNRRAR WKTKQLERDY NLLKRKFEAL KADNDALQAH NKKLVSELLA LKGRESNGIG 180 PINLNKETEA SWSKGSEKSC DFNLCTTTTH QSTNKHVFLN SSTEAANVAH LLQTSSRSDL 240 QCQKIDQMVP DESFCNMFTG VDDHSGFWPW PEQQHFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	135	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	2e-77	HD-ZIP family protein