PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028124636.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 474aa MW: 50768.9 Da PI: 8.7527

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028124636.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32	2.1e-10	48	74	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+r+GtC yG +C+++H++ XP_028124636.1 48 PGEPDCAYFMRNGTCGYGIKCRYNHPR 74 5789*********************96 PP
2	zf-CCCH	40	6.4e-13	94	120	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f++rtGtCk+G++CkF+H++ XP_028124636.1 94 PGEPACQFYLRTGTCKFGASCKFHHPR 120 57899********************96 PP
3	zf-CCCH	36.4	8.5e-12	141	166	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ XP_028124636.1 141 GEKECSYYLKTGQCKFGITCKFHHPE 166 7899********************96 PP
4	zf-CCCH	37.9	2.9e-12	297	322	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C+++++tG Ck+G++C+F+H+p XP_028124636.1 297 GXPECQYYLKTGDCKFGSSCRFHHPP 322 6799********************97 PP
5	zf-CCCH	30.3	7e-10	343	368	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C f++++G+Ck+G +CkF H++ XP_028124636.1 343 GVQPCAFYLQNGYCKFGHTCKFDHPM 368 6789********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MELYGRSAGR NGSDRPAEWV PAGPQTGIEE SVRRLGFWNS EILYPERPGE PDCAYFMRNG 60 TCGYGIKCRY NHPRDRSSVG VAVRIGGGEF PERPGEPACQ FYLRTGTCKF GASCKFHHPR 120 NGGGSISNVP PNSYGFPLRP GEKECSYYLK TGQCKFGITC KFHHPEPGGM SMPAPARPFY 180 STVQSSPIPS PDQYGGSSTS YRTGRPPLLP GSYVPGAYGP VLLPPGVVPI PGWSPYSGPV 240 SPVLSPSAPP TVGTSSLYGV PQLSSSAPAF SVPYSPLPST GDPSSVIKRK ECFQEPGXPE 300 CQYYLKTGDC KFGSSCRFHH PPDWVLSKAN YLLSPLGFPL RPGVQPCAFY LQNGYCKFGH 360 TCKFDHPMGT GRYSPSASSL TDMSVAPYMV GPSLATMAPS FSYSELRPEF ISGSNPHSSR 420 MPSSGNTSSS SVGLIFSQTG SASLSDVQLS SQSTAPLSIS TISTRQGGEV RRTS

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MELYGRSAGR NGSDRPAEWV PAGPQTGIEE SVRRLGFWNS EILYPERPGE PDCAYFMRNG  60
TCGYGIKCRY NHPRDRSSVG VAVRIGGGEF PERPGEPACQ FYLRTGTCKF GASCKFHHPR  120
NGGGSISNVP PNSYGFPLRP GEKECSYYLK TGQCKFGITC KFHHPEPGGM SMPAPARPFY  180
STVQSSPIPS PDQYGGSSTS YRTGRPPLLP GSYVPGAYGP VLLPPGVVPI PGWSPYSGPV  240
SPVLSPSAPP TVGTSSLYGV PQLSSSAPAF SVPYSPLPST GDPSSVIKRK ECFQEPGXPE  300
CQYYLKTGDC KFGSSCRFHH PPDWVLSKAN YLLSPLGFPL RPGVQPCAFY LQNGYCKFGH  360
TCKFDHPMGT GRYSPSASSL TDMSVAPYMV GPSLATMAPS FSYSELRPEF ISGSNPHSSR  420
MPSSGNTSSS SVGLIFSQTG SASLSDVQLS SQSTAPLSIS TISTRQGGEV RRTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-143	C3H family protein