PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028125017.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family ARF
Protein Properties Length: 689aa    MW: 76993.6 Da    PI: 6.1823
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028125017.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.65.6e-24127227198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv  ++L +gD++vF   + +++
  XP_028125017.1 127 FCKVLTASDTSTHGGFSVLRKHANEClpsldMSQQTPTQELISKDLHGLEWRFKHIFRGQPRRHLLTTGWSTFVTNKRLVAGDTFVFL--RAENG 219
                     99****************************9555555669999*********************************************..44999 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+v+r
  XP_028125017.1 220 ELRVGVRR 227
                     9*****98 PP
2Auxin_resp103.13.5e-34253332183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st++ F v+Y+Pr+  s+F+++++k+++a++++++vGmRf+m+fe+++s+err++Gt+vgv+dl+  +W++SkWrsLk
  XP_028125017.1 253 ASHAVSTQTLFVVYYKPRT--SQFIISLNKYLEAVNNEFAVGMRFRMRFEGDESPERRFTGTIVGVEDLSR-QWEKSKWRSLK 332
                     789***************6..9**********************************************777.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    
MANRGSFSQP NFSSEGYGGD DLYTELWKAC AGPLVDVPRS GERVFYFPQG HMEQLEASTN  60
QELNEKIPHF NLPSKILCRV INVHLRAEQE TDEVYAQITL VPEQDQTEPE SPDSCSPEPP  120
KPTVYSFCKV LTASDTSTHG GFSVLRKHAN ECLPSLDMSQ QTPTQELISK DLHGLEWRFK  180
HIFRGQPRRH LLTTGWSTFV TNKRLVAGDT FVFLRAENGE LRVGVRRVAR QQSSMPSSVI  240
SSQSMHLGVL ATASHAVSTQ TLFVVYYKPR TSQFIISLNK YLEAVNNEFA VGMRFRMRFE  300
GDESPERRFT GTIVGVEDLS RQWEKSKWRS LKVQWDEPTS IARPERVSPW EIEPFVPSVP  360
SGLVQQVIKK RPRPPIEIPE TASAVWNPSH APTQLIGNPE GQRSENSVVW HPRQSEISGT  420
ILNSTASCVS RTHANGGWLS SSNVNVPRNL FADETEDTKS TPAWSVLSGY STPRSGNQNN  480
NPLPDPIEGK KTETVSSYRL FGVDLKRPSM GAPFGEKVAV PPASVSNVGT EEHIPTTLSG  540
ADSDQKLDLS NACKEQRQGQ MQVLPMEVQS KQSCSTRSRT KVQMQGIAVG RAVDLTSLRG  600
YAELIDELEQ MFEIKGELRP RNKWEIVFTD DEGDMMLMGD DPWPEFCNMV RRIFICSSQD  660
VKKMNAGSKL PINAVDSEAT VFSLDTVEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370374KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0ARF family protein