PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028125244.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

SBP

Protein Properties

Length: 381aa MW: 41893.5 Da PI: 7.3169

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028125244.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.3	2.9e-40	94	170	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C ++gC+adls++++yhrrhkvCe+hsk+++v + g+++rfCqqCsrfh+l+efD++krsCr+rL++hn+rrrk+q+ XP_028125244.1 94 CCIDGCNADLSNCRDYHRRHKVCEMHSKTAEVSIGGHKKRFCQQCSRFHSLEEFDDGKRSCRKRLDGHNRRRRKPQP 170 99************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MDWNLRSPSW DLTGFEQEIS PNISPISGSS SSSYGGQGNK GEFSFDLKLG HVRNAGNESE 60 DSLQVPSVPK MQFLSPVSSK RARVVNNGIQ AALCCIDGCN ADLSNCRDYH RRHKVCEMHS 120 KTAEVSIGGH KKRFCQQCSR FHSLEEFDDG KRSCRKRLDG HNRRRRKPQP EHLSHSGSFL 180 SNYQGARLFP FSSPEAYPNT PLASPIWAGI VETKQDAKLY KQNKQNPYPG SSSGSYRQEG 240 KEFSFLHSTA LVLSNQTATQ ASTCQPNHKT VASSESGGNI CQMFCDGLST QALSSNCALS 300 LLSSSPLQTS EIGLSHMVPT TSIPAAYPLG PSLQNSSLES MDLLLVPNDS DTDVHCQGLF 360 QMARDLSSEN EASQTLHFYW E

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MDWNLRSPSW DLTGFEQEIS PNISPISGSS SSSYGGQGNK GEFSFDLKLG HVRNAGNESE  60
DSLQVPSVPK MQFLSPVSSK RARVVNNGIQ AALCCIDGCN ADLSNCRDYH RRHKVCEMHS  120
KTAEVSIGGH KKRFCQQCSR FHSLEEFDDG KRSCRKRLDG HNRRRRKPQP EHLSHSGSFL  180
SNYQGARLFP FSSPEAYPNT PLASPIWAGI VETKQDAKLY KQNKQNPYPG SSSGSYRQEG  240
KEFSFLHSTA LVLSNQTATQ ASTCQPNHKT VASSESGGNI CQMFCDGLST QALSSNCALS  300
LLSSSPLQTS EIGLSHMVPT TSIPAAYPLG PSLQNSSLES MDLLLVPNDS DTDVHCQGLF  360
QMARDLSSEN EASQTLHFYW E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	168	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	6e-63	SBP family protein