PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028125938.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family YABBY
Protein Properties Length: 164aa    MW: 18325.9 Da    PI: 8.3043
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028125938.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY227.34.1e-7021582170
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                     +++ +se vCyv+CnfCntilavsvP +s++++vtvrCGhC++llsvn+    q+l+ ++           ++l++++ +++   + + s+s+ +
  XP_028125938.1   2 SLDIASESVCYVHCNFCNTILAVSVPCSSMLTIVTVRCGHCANLLSVNMGALLQTLPHQDL----------QKLQKQQFSFEDASKDSGSSSKCN 86 
                     567899*************************************************999983..........455555555555555555544444 PP

           YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     +     e+ ++e pr+pp +rPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  XP_028125938.1  87 KFG-AFESAEHEPPRMPP-VRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 158
                     443.35778899999999.8****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MSLDIASESV CYVHCNFCNT ILAVSVPCSS MLTIVTVRCG HCANLLSVNM GALLQTLPHQ  60
DLQKLQKQQF SFEDASKDSG SSSKCNKFGA FESAEHEPPR MPPVRPPEKR QRVPSAYNRF  120
IKEEIQRIKA SNPDISHREA FSTAAKNWAH FPHIHFGLKL DGNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-64YABBY family protein