PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028125939.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family YABBY
Protein Properties Length: 163aa    MW: 18197.7 Da    PI: 8.0823
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028125939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY222.89.7e-6921572170
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                     +++ +se vCyv+CnfCntilavsvP +s++++vtvrCGhC++llsvn+    q+l+ ++              + ++++++  + +++s s+s+
  XP_028125939.1   2 SLDIASESVCYVHCNFCNTILAVSVPCSSMLTIVTVRCGHCANLLSVNMGALLQTLPHQDL-------------QLQKQQFSFEDASKDSGSSSK 83 
                     567899********************************************99999998773.............334444444444444433333 PP

           YABBY  97 ss.eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      + +   e+ ++e pr+pp +rPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  XP_028125939.1  84 CNkFGAFESAEHEPPRMPP-VRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 157
                     3302335678889999999.9****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    
MSLDIASESV CYVHCNFCNT ILAVSVPCSS MLTIVTVRCG HCANLLSVNM GALLQTLPHQ  60
DLQLQKQQFS FEDASKDSGS SSKCNKFGAF ESAEHEPPRM PPVRPPEKRQ RVPSAYNRFI  120
KEEIQRIKAS NPDISHREAF STAAKNWAHF PHIHFGLKLD GNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-66YABBY family protein